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NGS analysis

Variant discovery

We provide complete data analysis of sequencing data from major sequencing platforms (whole genome, whole exome, amplicon). We have experiences with analyzing Illumina data and Roche 454 data. Our pipeline include quality controls, mapping to the reference genome and variant calling. We developed algorithms for error filtering of SNP mutations.

RNA-seq

We provide complete data analysis of sequencing data from Illumina. Our pipeline include quality controls, mapping to the reference genome and calling differentially expressed genes. We are also performing isoform analyses.

ChIP-seq

We provide complete data analysis of sequencing data from Illumina. Our pipeline include quality controls, mapping to the reference genome and peek calling.

For analyses we use open source tools. The results are thus reproducible and we provide you with a whole pipeline description. We discuss with our customers usage of individual tools according to their preference.